Best Hotels in Labuan Bajo (2025 Guide)

The Best Hotels in Labuan Bajo

So, you’re planning a trip to Flores, Indonesia, and you want to stay at one of the Best Hotels in Labuan Bajo?

I get it! It might be a small town, but Labuan Bajo has almost too many options when it comes to beautiful accommodations. Basically, there’s everything here, from budget hostel stays to 5-star resorts and even over-water bungalows that rival the Maldives. 

When we visited, we knew choosing the right hotel was the difference between a dreamy adventure and getting a travel logistics headache. All in all, I wanted something close to the action (hello, Komodo National Park!), not too far from food and preferably with a view that would make everyone at home jealous! 😅 

In this guide, we’ve rounded up the best hotels in Labuan Bajo, aka the ones that are *actually* worth booking.

Let’s get into it! ✨

How We Chose These Labuan Bajo Hotels

When we travelled to Flores, Indonesia, we were in and out of Labuan Bajo 3 separate times, and we looked for something different on each visit.

1. A budget-friendly but nice accommodation in the heart of town
2. A unique private island escape
3. A luxurious 5-star stunner to cap off a wild adventure.

So, with that in mind, here’s how we narrowed down this list:

📍 Location: We looked at proximity to Komodo tours, restaurants, beaches, and ease of access (no one wants a 30-minute hike to breakfast).

🛏️ Accommodation Quality: Rooms that are clean, comfortable, and ideally… photogenic. Pools, sea views, and good Wi-Fi scored bonus points.

⭐ Guest Reviews: We combed through Booking.com, Google Reviews and Instagram to find places consistently loved by real guests.

💸 Value for Money: Whether budget or bougie, each hotel offers something that makes the price tag worth it!

Best Hotels in Labuan Bajo

Time to get into the good stuff, the best hotels Labuan Bajo has to offer!

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Sudamala Resort Seraya

Location: Private Island Baby!! (45 minute boat) | Book Here!

If you’re after barefoot luxury with a boat ride, Sudamala Seraya is calling your name. This private island resort is all white sand, turquoise water, and laid-back vibes, with coral reefs literally right off the beach. It’s peaceful, stunning, and the perfect mix of castaway charm and comfort.

✔️ Pros: Gorgeous design, beachfront location, epic sunsets
❌ Cons: Only accessible by boat, not ideal for quick town trips
✨ Perfect for: Couples or anyone craving a dreamy island escape with a touch of luxury
💸 Price: $$$

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TA’AKTANA, a Luxury Collection Resort & Spa

Location: A little above Labuan Bajo (7-minute drive) | Book Here!

Not only is TA’AKTANA Labuan Bajo’s newest luxury gem, but it also delivers five-star polish with ocean-facing suites, infinity pools, and every creature comfort you’d expect from a Luxury Collection property. Stylish, central, and a true modern oasis.

This is where you want to go if you are looking for a Maldives-esque overwater bungalow!

✔️ Pros: New, stunning design, luxe amenities, great food, overwater bungalows!
❌ Cons: High price tag, books out fast
✨ Perfect for: Honeymooners or anyone wanting 5-star pampering between boat trips.
💸 Money: $$$

Seaesta Komodo Hostel & Hotel

Location: Central Labuan Bajo (7-minute walk) | Book Now!

Who says budget has to be boring? Seaesta is a stylish, social hybrid – part boutique hotel, part hostel – with a vibe that’s anything but basic. Think a rooftop pool, live music, co-working space, and a killer view. Best of all, it’s one of the most affordable places in town and totally Instagram-worthy. Win-win!

✔️ Pros: Affordable, social vibe, great amenities
❌ Cons: Can have noisier hostel vibes
✨ Perfect for: Digital nomads, solo travellers, and backpackers who like their stays with a side of fun.
💸 Money: $

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AYANA Komodo Waecicu Beach

Location: Waecicu Beach (10-minute drive from town) | Book Now!

When it comes to luxury in Labuan Bajo, AYANA is the original. AYANA is all about upscale island life! Beachfront suites, an overwater jetty, multiple restaurants, and views that make your jaw drop. It’s polished but warm, and great for families too!

✔️ Pros: Amazing views, beach access, family-friendly
❌ Cons: Premium pricing, not walkable to town
✨ Perfect for: Families or couples who want beachfront luxury without sacrificing service.
💸 Money: $$$

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Plataran Komodo Resort & Spa

Location: Waecicu Beach area (14-minute drive) | Book Now!

Tucked into its own private cove, Plataran Komodo delivers quiet luxury without the crowd. Here, villas are scattered across lush tropical gardens, with a private beach and fine dining onsite. It’s the kind of indulgence that feels refined, not over the top.

✔️ Pros: Private setting, upscale villas, beach on your doorstep
❌ Cons: Pricey, limited nightlife
✨ Perfect for: Luxury travellers or honeymooners who want exclusivity.
💸 Money: $$$

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Meruorah Komodo Labuan Bajo

Location: Central Labuan Bajo (5-minute walk!) | Book Now!

A modern 5-star hotel offering spacious rooms with panoramic sea views. Of course, guests love its unbeatable location, making it easy to join Komodo tours or wander into town for dinner. With an outdoor pool, fitness centre, and upscale amenities, it’s a solid choice if you want style and convenience in one spot.

✔️ Pros: Central location, modern facilities, sea views
❌ Cons: Less boutique charm than smaller resorts
✨ Perfect for: Travellers who want comfort and location without going full resort-mode.
💸 Money: $$$

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Loccal Collection Hotel

Location: Hillside above Labuan Bajo (15-minute walk) | Book Now!

Unlike any other hotel in town, it’s easy to see why the Loccal is often called the “Santorini of Indonesia!” This hotel is all white walls, blue accents, and sweeping Flores Sea views. Undoubtedly, the most visually striking this close to town, it’s a bit quirky, and the perfect spot for sunset lovers. BUT, some people say this play is a but more focused on style rather than substance!

Now that being said, the on-site cave spa (yes, you read that right!) and cliffside restaurant earn this hotel extra points!

✔️ Pros: Unique design, epic views, very Instagrammable
❌ Cons: Style over substance for some guests
✨ Perfect for: Anyone chasing that perfect golden hour snap.
💸 Money: $$

Bintang Flores Hotel

Location: Central Labuan Bajo (10-minute drive) | Book Now!

So, Bintang Flores Hotel has been a long-time favourite with visitors, delivering classic hotel vibes with a tropical twist. Specifically, here you’ll find a private beach, big pool, sea-facing rooms, and reliable service – all within a short drive of town.

Of course, with a name like that, you are almost required to have a Bintang in hand at all hours of the day! 😜🍻

✔️ Pros: Reliable, private beach, family-friendly
❌ Cons: More standard hotel than boutique resort
✨ Perfect for: Families and travellers looking for a no-fuss, convenient option.
💸 Money: $$

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Menjaga Bay

Location: Southern coastline of Labuan Bajo (45-minute drive) | Book Now!

So, Menjaga Bay is the definition of low-key luxury, hidden away on a peaceful stretch of beach, it’s all about nature, privacy, and slow living. The owners are known for their hospitality, and you’ll fall asleep to nothing but waves and wake up with the jungle at your back.

Looking for overwater bungalows, check out Menjaga Bay! But, they sell out fast, so book quickly!!

✔️ Pros: Serene, sustainable, super friendly hosts
❌ Cons: A little far from town, limited dining nearby
✨ Perfect for: Couples and nature-lovers who want off-the-grid peace with a touch of comfort.
💸 Money: $$

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Le Pirate Island

Location: Just off the coast of Labuan Bajo (30-45 minutes by boat) | Book Now!

Okay, this one’s not technically in Labuan Bajo, but it’s such a unique experience we had to include it. To be sure, Le Pirate Island isn’t for everyone, it’s an off-grid, barefoot paradise with stilted beach huts, twinkly lights, ocean swings, and no Wi-Fi. Basically, it’s all about switching off and soaking up those castaway vibes. And yes, we wrote a full blog review.. Spoiler alert: it was that great.

✔️ Pros: Super unique, great value, fun island vibes
❌ Cons: No air-con, limited amenities, boat transfers required
✨ Perfect for: Adventurous travellers, backpackers, and digital detoxers who love a bit of novelty
🚫 Note: Adults Only!!
💸 Money: $

A Bit About Labuan Bajo

I realise some of you may be early on in your planning for a trip to Flores, Indonesia. So, I thought it might be helpful to give you some quick-fire info about Labuan Bajo and Flores as a whole!

Flores is part of Indonesia’s East Nusa Tenggara region and is best known as the gateway to Komodo National Park, home of the world-famous Komodo dragons. But that’s just the beginning. You can also hike volcanoes with colour-changing crater lakes (yes, really), visit archaeological sites where real-life ‘hobbits’ were discovered, or snorkel alongside giant manta rays in some of the clearest water we’ve ever seen.

Labuan Bajo is the main hub for all of this. It’s a small town on the western tip of Flores, but it punches way above its weight when it comes to epic experiences. This is where most tours depart, most visitors stay, and where you’ll find everything from sunset bars and fresh seafood restaurants to dive shops and day cruises.

For the other visual learners, here is a map with each of the hotels pinned!

Final Thoughts on the Best Hotels in Labuan Bajo

Whether you’re here to explore Komodo National Park, relax on a private island, or just catch the sunset with a cold Bintang in hand, picking the right hotel in Labuan Bajo can seriously elevate your trip. This town might be small, but the hostel to luxury hotels scene is anything but!

Also, as you’re planning your stay, don’t forget to check out some of our other Labuan Bajo travel guides. Want to swim with manta rays? We’ve got a post for that. Dreaming of Pink Beach or hiking Padar Island? Yep, covered. And if you’re eyeing Le Pirate Island, we wrote a full review (spoiler: it’s worth it).

See you in the islands! 🌴